Genome Browser created by G-OnRamp
- 15 participants from 15 institutions
- 7 genome assemblies
- Assembly sizes: 34MB – 2.1GB
- Number of scaffolds: 64 – 5,065
- 5 genomes with RNA-Seq data
- 4 UCSC Genome Browser, 3 JBrowse
June 2018 Workshop Materials
| Topic | Description | Type | Last update | Level |
|---|---|---|---|---|
| G-OnRamp workshop 2018 agenda | G-OnRamp Beta Testers Workshop Agenda | Agenda | 06/2018 | Beginner |
| Introduction to the GEP, Galaxy and G-OnRamp | Overview: Brief Introduction to the GEP, Galaxy and G-OnRamp; Goals for the Workshop | Lecture | 06/2018 | Beginner |
| Overview of Galaxy | Overview of Galaxy: Quick review of Galaxy 101/102 | Lecture | 06/2018 | Beginner |
| Using Galaxy to analyze RNA-Seq data | Using Galaxy for handling RNA-seq data | Walkthrough | 06/2018 | Beginner |
| Introduction to G-OnRamp | Introduction to G-OnRamp | Lecture | 06/2018 | Beginner |
| Introduction to G-OnRamp Walkthrough | Use G-OnRamp to create a genome browser for the D. biarmipes F element | Walkthrough | 06/2018 | Beginner |
| Customize the Genome Browsers produced by G-OnRamp | Customize the Genome Browsers produced by G-OnRamp | Walkthrough | 06/2018 | Advanced |
| Explore the Genome Browsers created by G-OnRamp | Explore the Genome Browsers created by G-OnRamp | Walkthrough | 06/2018 | Advanced |
| Explore the Genome Browsers created by G-OnRamp (answers) | Explore the Genome Browsers created by G-OnRamp answers | Walkthrough | 06/2018 | Advanced |
| Transfer large genomic datasets to G-OnRamp | Transfer large genomic datasets to G-OnRamp | Walkthrough | 06/2018 | Advanced |
| Use G-OnRamp to set up a collaborative annotation environment on Apollo | Use G-OnRamp to set up a collaborative annotation environment on Apollo | Lecture | 06/2018 | Advanced |
| Use Apollo to do collaborative genome annotation | Use Apollo to do collaborative genome annotation | Walkthrough | 06/2018 | Advanced |
| Comparative Gene Annotation with Galaxy / G-OnRamp | Comparative Gene Annotation with Galaxy / G-OnRamp | Walkthrough | 06/2018 | Advanced |
| Deployment options for G-OnRamp | Deployment options for G-OnRamp (e.g., centralized server, Docker, Virtual Machines) on local servers or on a public cloud (e.g., Amazon EC2, Microsoft Azure, Jetstream) | Lecture | 06/2018 | Advanced |
| Virtual Machine Installation Walkthrough | Install G-OnRamp virtual machine image on your computer | Walkthrough | 06/2018 | Advanced |
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