UCSC Assembly Hubs created by G-OnRamp

11 participants from 11 institutions
Five genome assemblies
Assembly sizes: 70Mb – 2.1Gb
Number of scaffolds: 1,464 – 40,372
Four genomes with RNA-seq data

July 2017 Workshop Materials

Topic	Description	Type	Last update	Level
G-OnRamp workshop 2017 agenda	G-OnRamp Beta Testers Workshop Agenda	Agenda	07/2017	Beginner
Introduction to the GEP, Galaxy and G-OnRamp	Overview: Brief Introduction to the GEP, Galaxy and G-OnRamp; Goals for the Workshop	Lecture	07/2017	Beginner
Overview of Galaxy	Overview of Galaxy: Quick review of Galaxy 101/102	Lecture	07/2017	Beginner
Using Galaxy to analyze RNA-Seq data	Using Galaxy for handling RNA-seq data	Walkthrough	07/2017	Beginner
Introduction to G-OnRamp	Introduction to G-OnRamp	Lecture	07/2017	Beginner
G-OnRamp Glossary	G-OnRamp glossary: explanation on commonly used terms, datatypes, and tools	Supplement	07/2017	Beginner
Introduction to G-OnRamp Walkthrough	Use G-OnRamp to create a genome browser for the D. biarmipes F element	Walkthrough	07/2017	Beginner
Customize the Genome Browsers produced by G-OnRamp	Customize the Genome Browsers produced by G-OnRamp	Walkthrough	07/2017	Advanced
Explore the Genome Browsers created by G-OnRamp	Explore the Genome Browsers created by G-OnRamp	Walkthrough	07/2017	Advanced
Explore the Genome Browsers created by G-OnRamp (answers)	Explore the Genome Browsers created by G-OnRamp answers	Walkthrough	07/2017	Advanced
Transfer large genomic datasets to G-OnRamp	Transfer large genomic datasets to G-OnRamp	Walkthrough	07/2017	Advanced
Deployment options for G-OnRamp	Deployment options for G-OnRamp (e.g., centralized server, Docker, Virtual Machines) on local servers or on a public cloud (e.g., Amazon EC2, Microsoft Azure, Jetstream)	Lecture	07/2017	Advanced
Virtual Machine Installation Walkthrough	Install G-OnRamp virtual machine image on your computer	Walkthrough	07/2017	Advanced
CloudLaunch Deployment Walkthrough	Launch the G-OnRamp instance on the cloud	Walkthrough	07/2017	Advanced
Differential expression analysis with RNA-Seq	Differential expression analysis with RNA-Seq	Lecture	07/2017	Advanced