UCSC Assembly Hubs created by G-OnRamp

  • 11 participants from 11 institutions
  • Five genome assemblies
  • Assembly sizes: 70Mb – 2.1Gb
  • Number of scaffolds: 1,464 – 40,372
  • Four genomes with RNA-seq data

July 2017 Workshop Materials

TopicDescriptionTypeLast updateLevel
G-OnRamp workshop 2017 agendaG-OnRamp Beta Testers Workshop AgendaAgenda07/2017Beginner
Introduction to the GEP, Galaxy and G-OnRampOverview: Brief Introduction to the GEP, Galaxy and G-OnRamp; Goals for the Workshop
Overview of GalaxyOverview of Galaxy: Quick review of Galaxy 101/102
Using Galaxy to analyze RNA-Seq dataUsing Galaxy for handling RNA-seq data
Introduction to G-OnRampIntroduction to G-OnRamp
G-OnRamp GlossaryG-OnRamp glossary: explanation on commonly used terms, datatypes, and toolsSupplement 07/2017Beginner
Introduction to G-OnRamp WalkthroughUse G-OnRamp to create a genome browser for the D. biarmipes F elementWalkthrough07/2017Beginner
Customize the Genome Browsers produced by G-OnRampCustomize the Genome Browsers produced by G-OnRamp
Explore the Genome Browsers created by G-OnRampExplore the Genome Browsers created by G-OnRampWalkthrough07/2017Advanced
Explore the Genome Browsers created by G-OnRamp (answers)Explore the Genome Browsers created by G-OnRamp answersWalkthrough07/2017Advanced
Transfer large genomic datasets to G-OnRampTransfer large genomic datasets to G-OnRampWalkthrough07/2017Advanced
Deployment options for G-OnRampDeployment options for G-OnRamp (e.g., centralized server, Docker, Virtual Machines) on local servers or on a public cloud (e.g., Amazon EC2, Microsoft Azure, Jetstream)Lecture07/2017Advanced
Virtual Machine Installation WalkthroughInstall G-OnRamp virtual machine image on your computerWalkthrough07/2017Advanced
CloudLaunch Deployment WalkthroughLaunch the G-OnRamp instance on the cloudWalkthrough07/2017Advanced
Differential expression analysis with RNA-Seq Differential expression analysis with RNA-SeqLecture07/2017Advanced