G-OnRamp

Create Genome Browsers for Genome Annotation

G-OnRamp Workshop July 2016

UCSC Assembly Hubs created by G-OnRamp

  • 10 participants from 9 institutions
  • Five genome assemblies
  • Assembly sizes: 111Mb – 2.8Gb
  • Number of scaffolds: 54 – 402,501
  • Four genomes with RNA-seq data

G-OnRamp 2016 workshop materials

TopicDescriptionTypeLast updatedLevel
G-OnRamp beta workshop agenda 2016Agenda for G-OnRamp beta workshop in 2016Agenda07/21/2016Beginner
Introduction to GEP and Galaxy ProjectProvides an overview of the main motivations behind the G-OnRamp projectLecture07/31/2016Beginner
Overview of GalaxyBasic usage of Galaxy, data analysis, edit and reuse analysis workflows, resources and communityLecture07/31/2016Beginner
Introduction to G-OnRampKey features of G-OnRamp and future development plansLecture07/31/2016Beginner
Introduction to G-OnRamp WalkthroughThis walkthrough covers topics including how to create an account and login, how to import the G-OnRamp workflow into your workspace, how to modify the workflow by This walkthrough covers topics including how to modify tool parameters, how to add or delete tools, and how to add or remove evidence tracks from the Hub Archive CreatorWalkthrough07/31/2016Beginner
Customize the Genome Browsers produced by G-OnRampThis walkthrough will cover topics including how to modify tool parameters, how to add or delete tools, and how to add or remove evidence tracks from the Hub Archive CreatorWalkthrough07/31/2016Advanced
RNA-seq Analysis using GalaxyOverview of RNA-Seq, quality control and read trimming, mapping RNA-Seq reads, transcriptome assembly, additional training resourcesLecture07/31/2016Advanced
Issues of Creating Whole Genome BrowsersObtain genome assemblies and protein sequences from NCBI, transfer large genomics datasets to Galaxy, generate common bioinformatics file formats, datatypes in GalaxyLecture07/31/2016Advanced