Training materials for release 1.1 of G-OnRamp

TopicDescriptionTypeLast updateLevel
Overview of GalaxyOverview of Galaxy: Quick review of Galaxy 101/102
Lecture10/2019Beginner
Using Galaxy to analyze RNA-Seq dataUsing Galaxy for handling RNA-seq data
Walkthrough10/2019Beginner
Introduction to G-OnRampIntroduction to G-OnRamp
Lecture10/2019Beginner
Introduction to G-OnRamp WalkthroughUse G-OnRamp to create a genome browser for the D. biarmipes F elementWalkthrough10/2019Beginner
Customize the Genome Browsers produced by G-OnRampCustomize the Genome Browsers produced by G-OnRamp
Walkthrough10/2019Advanced
Explore the Genome Browsers created by G-OnRampExplore the Genome Browsers created by G-OnRampWalkthrough10/2019Advanced
Transfer large genomic datasets to G-OnRampTransfer large genomic datasets to G-OnRampWalkthrough10/2019Advanced
Use G-OnRamp to set up a collaborative annotation environment on ApolloUse G-OnRamp to set up a collaborative annotation environment on ApolloLecture10/2019Advanced
Set up a collaborative annotation environment on Apollo for DrosophilaSet up a collaborative annotation environment on Apollo for Drosophila biarmipesWalkthrough10/2019Advanced
Use Apollo to do collaborative genome annotationUse Apollo to do collaborative genome annotationWalkthrough10/2019Advanced
Comparative Gene Annotation with Galaxy / G-OnRampComparative Gene Annotation with Galaxy / G-OnRampWalkthrough10/2019Advanced
Deployment options for G-OnRamp (Keynote)Deployment options for G-OnRamp (e.g., centralized server, Docker, Virtual Machines) on local servers or on a public cloud (e.g., Amazon EC2, Microsoft Azure, Jetstream)Lecture10/2019Advanced
Deployment options for G-OnRamp (PDF)Deployment options for G-OnRamp (e.g., centralized server, Docker, Virtual Machines) on local servers or on a public cloud (e.g., Amazon EC2, Microsoft Azure, Jetstream)Lecture10/2019Advanced
Virtual Machine Installation WalkthroughInstall G-OnRamp virtual machine image on your computerWalkthrough10/2019Advanced
CloudLaunch Deployment WalkthroughLaunch G-OnRamp on the AWS cloud service provider with CloudLaunchWalkthrough10/2019Advanced
AWS Deployment via Community AMIs WalkthroughLaunch G-OnRamp on the AWS cloud service provider via Community AMIs WalkthroughWalkthrough10/2019Advanced
Storing and Accessing G-OnRamp’s Assembly Hubs outside of GalaxyStoring and Accessing G-OnRamp’s Assembly Hubs outside of GalaxyLecture10/2019Advanced
Differential expression analysis with RNA-Seq Differential expression analysis with RNA-SeqLecture10/2019Advanced
G-OnRamp GlossaryG-OnRamp glossary: explanation on commonly used terms, datatypes, and toolsSupplement 12/2018Beginner